NCBI PubMed MCP server

Search PubMed, read abstracts and summaries, and find similar articles in NCBI PubMed. Hosted by usefulapi: connect it to Claude, ChatGPT, Cursor or any MCP client.

Connect NCBI PubMedFree 50 tool calls / monthPro $9/mo · $90/yr · pricing9 tools

What can I ask?

Turn on the NCBI PubMed connector, then ask in plain words. The AI picks the tools.

What you can do with NCBI PubMed in Claude and ChatGPT

For researchers, clinicians and librarians who search biomedical literature in PubMed.

Search recent articles on a topic

Run a PubMed search with the same syntax as the search box, then read the titles, authors, journal and dates of the hits.

Build a reference list with abstracts

Fetch the citation and abstract of up to 20 PMIDs. Keep the PMID and journal of each article for citing.

Find articles similar to a paper

List the similar articles of one PMID, then read their titles and dates.

Count publications on a topic

Search with a date range and read the total hit count, for example the records on one drug in one year.

Find the right search field codes

Read PubMed's record count, last update time and the field codes, such as TIAB or AU, that the search accepts.

How do I connect NCBI PubMed?

Before you connect

The login page asks for your NCBI API key.

Create the key in your NCBI account: Settings → API Key Management. It is used only to call NCBI on your behalf; it is never shown to anyone, and it sets your own request limit (10 requests per second).

Claude claude.ai · Desktop

  1. Open Customize → Connectors, then click + Add → Add custom connector.
  2. Enter the name NCBI PubMed and this URL, then click Add:
    https://pubmed-ncbi-e-utilities.usefulapi.io/mcp
  3. Claude opens the login page: enter your NCBI API key.
  4. In a chat, click + → Connectors and turn on NCBI PubMed.

Team and Enterprise: an Owner adds the connector for the organization first.

ChatGPT chatgpt.com

  1. Open Plugins, click +, then Add custom MCP server.
  2. Enter the name NCBI PubMed and this URL, choose OAuth as the authentication, confirm the warning and create it:
    https://pubmed-ncbi-e-utilities.usefulapi.io/mcp
  3. ChatGPT opens the login page: enter your NCBI API key.
  4. In Plugins, install NCBI PubMed, then choose it in a chat.

No Add custom MCP server option? It depends on your account or workspace settings: see OpenAI's guide.

Claude Code

Run this command, then run /mcp in Claude Code to log in:

claude mcp add --transport http pubmed-ncbi-e-utilities https://pubmed-ncbi-e-utilities.usefulapi.io/mcp

Cursor

Add to Cursor or add this to ~/.cursor/mcp.json:

{
  "mcpServers": {
    "pubmed-ncbi-e-utilities": {
      "url": "https://pubmed-ncbi-e-utilities.usefulapi.io/mcp"
    }
  }
}

VS Code

Add to VS Code or add this to .vscode/mcp.json:

{
  "servers": {
    "pubmed-ncbi-e-utilities": {
      "type": "http",
      "url": "https://pubmed-ncbi-e-utilities.usefulapi.io/mcp"
    }
  }
}

Codex

Run these commands. The second one opens the login page:

codex mcp add pubmed-ncbi-e-utilities --url https://pubmed-ncbi-e-utilities.usefulapi.io/mcp
codex mcp login pubmed-ncbi-e-utilities

Other clients

Windsurf, Cline, Zed and other MCP clients: add this URL as a remote MCP server (Streamable HTTP). The client then opens the login page in your browser.

https://pubmed-ncbi-e-utilities.usefulapi.io/mcp

Add only the URL. Do not add an Authorization header or an API key to the client config. The server signs you in with OAuth: the login page asks for your NCBI API key. If the config has such a header, remove it: some clients then send that header instead of the login token, and every call fails with 401.

Pricing

PlanPriceLimit
Free$050 tool calls / month
Proper user$9/mo · $90/yrUnlimited*

*Pro fair use limit: 10,000 tool calls a month on this server. For more, write to [email protected].

Pro covers this NCBI PubMed server only. Subscribe with pubmed_upgrade (it returns a Stripe Checkout link). Cancel any time with pubmed_cancel_subscription: Pro continues to the end of the paid period, with no refund for the current period, and running pubmed_upgrade before then undoes the cancel. Or write to [email protected].

Tools 9

Show all 9 tools (the AI picks them for you)

Read only · 5

  • Search PubMedpubmed_search
    Search PubMed with the same query syntax as the PubMed search box (fields, MeSH terms, boolean operators). Returns the total hit count and a list of PMIDs; use pubmed_summary or pubmed_fetch_abstracts on the PMIDs. E-utilities: esearch.fcgi?db=pubmed.
  • Get article summariespubmed_summary
    Get short metadata for up to 100 PubMed articles by PMID: title, authors, journal, publication date, DOI and PubMed Central ID. Does not return abstracts (use pubmed_fetch_abstracts). E-utilities: esummary.fcgi?db=pubmed.
  • Get abstractspubmed_fetch_abstracts
    Get the citation and abstract text for up to 20 PubMed articles by PMID, as plain text. Keep the PMID and journal when you cite an article. E-utilities: efetch.fcgi?db=pubmed&rettype=abstract.
  • Find related articlespubmed_related
    List PubMed articles that are similar to one article (PubMed's 'similar articles' links), by PMID. Returns the linked PMIDs; use pubmed_summary for their details. E-utilities: elink.fcgi?dbfrom=pubmed&cmd=neighbor.
  • PubMed database infopubmed_database_info
    Show PubMed's current record count, last update time and the search field codes (for example TIAB or AU) that pubmed_search accepts. E-utilities: einfo.fcgi?db=pubmed.

Your usefulapi plan · 4

  • Usage status (free-tier meter)pubmed_usage_status
    Report the caller's current usage: the plan, calls used this month, the limit of the plan (the free monthly cap or the Pro fair use limit), remaining, and whether the limit is reached. Read-only; does not count against the meter.
  • Request a missing featurepubmed_request_feature
    Tell usefulapi that the user needs something the NCBI PubMed tools cannot do yet (a missing tool, field or filter). Call it only when the user asks for something none of the tools can do, and tell the user that you send the request. Do not call it for errors or for normal requests. Do not include personal data, credentials or customer records. Stored with the product name and the client type (for example Claude or Cursor), without the user's account. At most 5 requests per day. Does not count against the meter.
  • Upgrade to Pro (unlimited*)pubmed_upgrade
    Get Pro: unlimited tool calls (fair use limit: 10,000 a month) on NCBI PubMed (the free tier caps monthly usage). Plans: "monthly" — $9/month; "yearly" — $90/year (2 months free). Cancel any time: Pro then runs to the end of the paid period, so it also suits a one-time job. *A fair use limit applies. For heavy use (near Pro's limit): "plus" or "plus_yearly" — Pro+, $39/month or $390/year, unlimited tool calls (fair use limit: 100,000 a month); an existing Pro subscription changes to Pro+ in place (needs confirm: true; the price difference for the rest of the period is charged at once). Otherwise returns a short link to open in your browser (it opens Stripe Checkout); after payment the account upgrades automatically. Does not count against the meter.
  • Cancel the Pro subscriptionpubmed_cancel_subscription
    Cancel the caller's NCBI PubMed Pro subscription at the end of the paid period (no refund for the current period; Pro continues until then, then the free tier applies). Requires confirm: true. Run pubmed_upgrade later to undo the cancel before the period ends. Does not count against the meter.

FAQ

What can I do with NCBI PubMed in Claude or ChatGPT?

Search recent articles on a topic. Build a reference list with abstracts. Find articles similar to a paper. Count publications on a topic. Find the right search field codes. See what you can do for the details.

Is this an official NCBI PubMed product?

No. usefulapi is an independent service. It is not affiliated with or endorsed by NCBI PubMed. The server calls the NCBI PubMed API with your own NCBI PubMed access, so it sees only the data that your account can see.

Can I connect NCBI PubMed to Claude or ChatGPT?

Yes. In Claude, add this server's URL as a custom connector. In ChatGPT, add it as a custom MCP server in Plugins. Then log in once. Cursor, VS Code, Claude Code and Codex work too. See the setup steps.

What do I need to connect?

The login page asks for your NCBI API key. See Before you connect for where to find it.

Do I put my NCBI PubMed key or an Authorization header in the client config?

No. Add only the URL. Do not add an Authorization header or an API key to the client config. The server signs you in with OAuth: the login page asks for your NCBI API key. If the config has such a header, remove it: some clients then send that header instead of the login token, and every call fails with 401.

How do you keep my NCBI PubMed credentials?

The login stores them encrypted in the authorization grant of your connection. The server uses them to call the NCBI PubMed API for you and to derive a private account id for usage metering. usefulapi does not show them on any page or in any reply. To stop all access, remove the connector and change or delete these credentials in NCBI PubMed.

Can the AI change my NCBI PubMed data?

All 5 NCBI PubMed tools are marked read-only.

What does it cost?

The Free plan gives 50 tool calls / month. Pro costs $9/mo or $90/yr, with unlimited tool calls (fair use limit: 10,000 tool calls a month), for this NCBI PubMed server only. Cancel any time: Pro then runs to the end of the paid period. Run pubmed_usage_status to see how many calls you used.

How do I subscribe or cancel?

Ask the AI to run pubmed_upgrade: it returns a Stripe Checkout link. To cancel, run pubmed_cancel_subscription. Pro continues to the end of the paid period.

What if a NCBI PubMed tool that I need is missing?

Tell the AI what you wanted to do. It can send the request with pubmed_request_feature. We store the text with the server name, the type of AI client and the tool you tried, not with your account, and read every request when we plan new tools. You can send up to 5 requests per day.

Which AI clients can I use?

Any client that supports remote MCP servers (Streamable HTTP) with OAuth login: Claude (web and desktop), Claude Code, ChatGPT, Codex, Cursor, VS Code, Windsurf and others.

This is a Model Context Protocol endpoint — meant to be connected from an AI client, not opened in a browser. An invalid_token response at the URL is the auth gate working as designed; clients authenticate automatically.

Need a tool this server does not have, or a connection to another system? We build custom integrations and MCP servers.

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